With the 2-stroke did you not have three guys fishing in the rear? If so then the weight difference is only the weight difference between the two motors. Moving the the batteries not only takes 60 lbs off the rear but it adds 60 lbs up front. Believe it or not, it should help.
Are your drains straight thru or do they go thru a hose? If a hose there are check valves you can get for them.