Craig, with Morse Type "S" controls (one lever, one function), you want to have your rigging ports coming out of the upper control station directly beneath the binnacles...basically a straight shot downwards.I've done a ton of dual station Morse control boats, that's the way to go...
Hey Craig, I have the same setup (and tower as you); the morse controls physically fit- just make sure when you mount them- you try to have them mounted directly above the "rigging tubes" to prevent any binding. I can take a picture this week. Also on the hydraulic helm, see about getting 45', 90', and maybe a 15 or 25' fitting to come off the bottom of the helm so you don't get any kinks in the hoses.