Sounds like you may have forgot to land the positive or negative or both to the battery that feeds your buss bar that the switches are connected to.Check that and I'm sure you'll see some wires hanging that shouldn't be.
OK,Now we got pics so...So let's start here first.Middle pic: Red wire on fuse panel with yellow butt connector. Where does that terminate? Is that the same wire exiting the "Perko" switch at the top (between the R & k)? It appears to these tired eyes to be two different gauge wires. Does that wire have an in-line fuse also?Aside: I'd clean up that ground buss real good while I was working on the switch panel gremlin. Can you get a pic of the back side of the toggle switch panel? There will be a wire (hopefully red) that should lead back to that fuse panel in the middle pic. Power to the panel needs to run through the "Perko" switch so it receives power in the "on" position only (stating the obvious). It could indeed run that way but your pics, while very clear(in focus) don't give a field of view to see where that bottom wire is headed. Standard procedure would have the red wire connected to the "on" post (of your style switch). That allows power to run to the motor (large gauge, red battery wire) itself and feed the main distribution buss with the smaller gauge, red wire. That wire should have an in-line fused connector as close to the "Perko" switch for protection of the feed to the main buss. From the buss the toggle panel would receive its feed (power). There should be no need to fuse that line (although mine is, again belt and suspenders). You should be able to see that feed to the toggle panel.Again, clean that ground buss!