Raised my floor 5 inches, my drains are out the sides right before the stern cabinet wall.
I know you asked Matt, but thought I would chime in: I raised my floor 1.5". It was convenient because I kept a small amount of the original floor around the edge of the hull, and when I put the new floor in I glassed 3/4" block to the old floor, then the new floor was 3/4" about that.
First, congrats on starting the rebuild. Second, I want the Bertram next to it!
I don't really see why anyone would save the old stringer system unless it was in really good shape. Seems like more work to defoam, re laminate and raise the old stringers than to build a new stringer system. By ripping out the old stringers it also allows you to re glass the inside of the hull before putting your new stringers in.
I cut the stringers out in full length so I can make a mold for each so that I can hopefully drop them right in.
You might be able to use those stringers as molds - cut the bottom flange off, cover in visquene and start laying your lam up.BTW - how thick are those on the sidewalls and the top?