A T-Top puts far less stress on the sole and stringers. My console spans the width of the stringers so I added backer plates under the sole. I drilled the bolt holes out and inserted 5/16 SS T-Nuts. With four bolts per leg, four legs, plus braces attached to the console I am confident the T-Top will be secure.
A tower though is a different story. If I went that route I would bolt through the stringers. If you do tape alumimun be sure to coat the threads to prevent electrolysis corrosion between the plate and the SS bolts.
MD