Don't fret at all... another school of thought is this: When done, you undoubtedly, inevitably, and invariably have to do some grinding. Why not make sure the largest (and strongest) layer in your cloth sandwich is the first one at the bottom of your lamination and the smallest piece is at the top so that you minimize how much of the long, continuous laminate you grind back out of the job. I struggled with this same issue for a long time and I've done repairs both ways. Either will work, but ultimately I think I'd rather be grinding small glass filler pieces off the top rather than the largest sheet of glass that provides the most structural benefit. Just another perspective to ponder.
I've seen mixed reviews but when overlapping your layers of fiberglass whether it's mat or biaxel or so on. Is it better for your first layer to be longest then shorten layers after that. Or should your last layer be the longest